Man pages for RTNsurvival
Survival analysis using transcriptional networks inferred by the RTN package
| hclust_semisupervised | Semi-supervised hierarchical clustering |
| RTNsurvival-package | Performs survival analysis using transcriptional networks... |
| tni2tnsPreprocess-methods | Preprocessing of TNS class objects |
| tnsAREA3-methods | Compute regulon activity by calling aREA (analytic Rank-based... |
| TNS-class | TNS: An S4 class for survival analysis using transcriptional... |
| tnsCoxInteraction-methods | Cox regression analysis for dual regulons |
| tnsCox-methods | Cox regression analysis for TNS class objects |
| TNS.data | A pre-processed dataset for demonstration purposes only. |
| tnsGet-methods | Get information from slots in a TNS object |
| tnsGSEA2-methods | Compute regulon activity using 2-tailed Gene Set Enrichment... |
| tnsInteraction-methods | Survival analysis for dual regulons |
| tnsKmInteraction-methods | Kaplan-Meier analysis for dual regulons |
| tnsKM-methods | Kaplan-Meier analysis for TNS class objects |
| tnsPlotCovariates-methods | Plot regulon activity and categorical covariates |
| tnsPlotCoxInteraction-methods | Plot results from Cox regression analysis for dual regulons |
| tnsPlotCox-methods | Cox plots for TNS class objects |
| tnsPlotGSEA2-methods | Plot 2-tailed GSEA for a sample from a TNS |
| tnsPlotKmInteraction-methods | Plot results from Kaplan-Meier analysis for dual regulons |
| tnsPlotKM-methods | Kaplan-Meier plots for TNS class objects |
| tnsPlotSRE-methods | Plot Subgroup Regulon Enrichment for TNS-class objects |
| tnsSRD-methods | Subgroup Regulon Difference for TNS-class objects |
| tnsSRE-methods | Subgroup Regulon Enrichment for TNS-class objects |
| tnsStratification | Sample stratification for a TNS object |
