Survival analysis using transcriptional networks inferred by the RTN package

hclust_semisupervised | Semi-supervised hierarchical clustering |

RTNsurvival-package | Performs survival analysis using transcriptional networks... |

tni2tnsPreprocess-methods | Preprocessing of TNS class objects |

tnsAREA3-methods | Compute regulon activity by calling aREA (analytic Rank-based... |

TNS-class | TNS: An S4 class for survival analysis using transcriptional... |

tnsCoxInteraction-methods | Cox regression analysis for dual regulons |

tnsCox-methods | Cox regression analysis for TNS class objects |

TNS.data | A pre-processed dataset for demonstration purposes only. |

tnsGet-methods | Get information from slots in a TNS object |

tnsGSEA2-methods | Compute regulon activity using 2-tailed Gene Set Enrichment... |

tnsInteraction-methods | Survival analysis for dual regulons |

tnsKmInteraction-methods | Kaplan-Meier analysis for dual regulons |

tnsKM-methods | Kaplan-Meier analysis for TNS class objects |

tnsPlotCovariates-methods | Plot regulon activity and categorical covariates |

tnsPlotCoxInteraction-methods | Plot results from Cox regression analysis for dual regulons |

tnsPlotCox-methods | Cox plots for TNS class objects |

tnsPlotGSEA2-methods | Plot 2-tailed GSEA for a sample from a TNS |

tnsPlotKmInteraction-methods | Plot results from Kaplan-Meier analysis for dual regulons |

tnsPlotKM-methods | Kaplan-Meier plots for TNS class objects |

tnsPlotSRE-methods | Plot Subgroup Regulon Enrichment for TNS-class objects |

tnsSRD-methods | Subgroup Regulon Difference for TNS-class objects |

tnsSRE-methods | Subgroup Regulon Enrichment for TNS-class objects |

tnsStratification | Sample stratification for a TNS object |

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