tnsInteraction-methods: Survival analysis for dual regulons

In RTNsurvival: Survival analysis using transcriptional networks inferred by the RTN package

Description

A generic call to 'tnsCoxInteraction' and 'tnsKmInteraction' functions.

Usage

## S4 method for signature 'TNS'
tnsInteraction(tns, ..., verbose = TRUE)

Arguments

tns	A TNS object, which must have passed GSEA2 analysis.
...	Parameters passed to tnsKmInteraction and tnsCoxInteraction functions.
verbose	A logical value specifying to display detailed messages (when verbose=TRUE) or not (when verbose=FALSE).

Value

A TNS object evaluated by the 'tnsKmInteraction' and 'tnsCoxInteraction' functions.

Examples

# load survival data
data(survival.data)

# load TNI-object
data(stni, package = "RTN")

stns <- tni2tnsPreprocess(stni, survivalData = survival.data, 
keycovar = c('Grade','Age'), time = 1, event = 2)
stns <- tnsGSEA2(stns)

# survival analysis for dual regulons
# stns <- tnsInteraction(stns, stepFilter = FALSE)

RTNsurvival documentation built on Nov. 12, 2020, 2 a.m.