RTopper: This package is designed to perform Gene Set Analysis across multiple genomic platforms

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the RTopper package is designed to perform and integrate gene set enrichment results across multiple genomic platforms.

Author
Luigi Marchionni <marchion@jhu.edu>, Svitlana Tyekucheva <svitlana@jimmy.harvard.edu>
Date of publication
None
Maintainer
Luigi Marchionni <marchion@jhu.edu>
License
GPL (>= 3)
Version
1.20.0

View on Bioconductor

Man pages

adjustPvalGSE
Multiple testing correction
combineGSE
Combines GSE results
computeDrStat
Computes gene-to-phenotype associations scores
convertToDr
Converts genomic data to a list suitable for computing...
dat
A test dataset for the RTopper package
fgsList
A list of Functional Gene Set (FGS) to be used to run the...
gseResultsSep
A list of separated gene set enrichment p-values to be used...
intScores
A list of genomic scores integrated across distinct data sets...
pheno
A test dataset for the RTopper package
RTopper-package
A package to perform run Gene Set Enrichment across genomic...
runBatchGSE
To perform GSE analysis over multipple experiments and...
sepScores
A list of separate gene-to-phenotype association scores,...

Files in this package

RTopper/DESCRIPTION
RTopper/LICENSE
RTopper/NAMESPACE
RTopper/R
RTopper/R/functions.R
RTopper/build
RTopper/build/vignette.rds
RTopper/data
RTopper/data/datalist
RTopper/data/exampleData.rda
RTopper/data/fgsList.rda
RTopper/data/gseResultsSep.rda
RTopper/data/intScores.rda
RTopper/data/sepScores.rda
RTopper/inst
RTopper/inst/CITATION
RTopper/inst/doc
RTopper/inst/doc/RTopper.R
RTopper/inst/doc/RTopper.Rnw
RTopper/inst/doc/RTopper.pdf
RTopper/man
RTopper/man/RTopper-package.Rd
RTopper/man/adjustPvalGSE.Rd
RTopper/man/combineGSE.Rd
RTopper/man/computeDrStat.Rd
RTopper/man/convertToDr.Rd
RTopper/man/dat.Rd
RTopper/man/fgsList.Rd
RTopper/man/gseResultsSep.Rd
RTopper/man/intScores.Rd
RTopper/man/pheno.Rd
RTopper/man/runBatchGSE.Rd
RTopper/man/sepScores.Rd
RTopper/vignettes
RTopper/vignettes/RTopper.Rnw
RTopper/vignettes/RTopper.bib
RTopper/vignettes/preamble.tex
RTopper/vignettes/subfigure.sty
RTopper/vignettes/vmargin.sty