fgsList: A list of Functional Gene Set (FGS) to be used to run the...

Description Usage Format Source Examples

Description

A list containing distinct types of FGS (i.e. Gene Ontology, KEGG pathways). Each FGS is type is a list of named chararacter vectors, one for each FGS, containing the gene identifiers. Vectors names describe the FGS. Can be used as input to runBatchGSE.

Usage

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Format

This object is a list of length two:

"go": this is a list of 5 character vectors, corresponding to 5 distinct Gene Ontology (GO) terms. Genes annotated to each GO term are identified by their gene symbol;

"kegg": this is a list of 5 character vectors, corresponding to 5 distinct KEGG pathways. Genes annotated to each KEGG pathway are identified by their gene symbol;

Source

The FGS were obtained from the org.Hs.eg.db pakage, (use the org.Hs.eg function to see the content); These FGS were annotated using data from GO.db and KEGG.db packages (use the GO and KEGG functions to see the content).

Examples

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RTopper documentation built on Nov. 8, 2020, 5:08 p.m.