pheno: A test dataset for the RTopper package

In RTopper: This package is designed to perform Gene Set Analysis across multiple genomic platforms

Description

A data.frame with 2 columns containing the phenotypic class indicator for the 95 patients analyzed and used in the examples. Can be used as input to convertToDr.

Usage

 data(exampleData) 

Format

This object is a data.frame with two columns:

"Sample": the first column contains the patients identifiers;

"Class": the second columns contain a numeric indicator (0 or 1) corresponding to the phenotypic class of each patient;

Source

The Cancer Genome Atlas (TCGA) project http://cancergenome.nih.gov/

References

The Cancer Genome Atlas (TCGA) Research Network. “Comprehensive genomic characterization defines human glioblastoma genes and core pathways”. Nature, 2008, October 23; 455(7216): 1061-1068

Examples

data(exampleData)
class(pheno)
colnames(pheno)
str(pheno)

RTopper documentation built on Nov. 8, 2020, 5:08 p.m.