Files in RVS

Computes estimates of the probability of related individuals sharing a rare variant

README.md R/multipleFamilyCalculations.R R/pedigree-methods.R R/multipleFamilyCalculationsBackend.R R/sharingProbabilityCalculations.R R/RVgene.R R/RVsharing.R R/documentation.R R/sharingProbabilityCalculationsSplitting.R R/grainNetworkHelper.R R/monteCarloMethods.R R/relatedFoundersCorrection.R vignettes/RVS.Rmd man/GeneDrop.Rd man/multipleVariantPValue.Rd man/convertMatrix.Rd man/samplePedigrees.Rd man/marginalProb.Rd man/oldArgs.Rd man/founderOccurence.Rd man/fam28003.vcf.Rd man/processPedigree-methods.Rd man/enrichmentPValue.Rd man/multipleVariantPValue_R_Backend.Rd man/RVS.Rd man/oneFounderSharingProb.Rd man/multipleFamilyPValue_R_Backend.Rd man/areMating.Rd man/createNetwork.Rd man/inferTheta.Rd man/enrichmentPValue_R_Backend.Rd man/ped2trio.Rd man/ancestorDistance.Rd man/monteCarloSharingProb.Rd man/computePhiVec.Rd man/SnpMatrixToCount.Rd man/runMonteCarlo.Rd man/exactSharingProb.Rd man/RVgene.Rd man/computePFU.Rd man/checkArgs.Rd man/extract_carriers.Rd man/twoFounderSharingProb.Rd man/RVsharing-methods.Rd man/ComputeKinshipPropCoef-methods.Rd man/snpMat.Rd man/ex.ped.mat.Rd man/simulatePedigree.Rd man/numerProb.Rd man/fam15157.vcf.Rd man/oneFounderSharingProbSplitting.Rd man/relatedFoundersCorrection.Rd man/isDescendant.Rd man/get.psubset.Rd man/denomProb.Rd man/multipleFamilyPValue.Rd man/inferNumAlleles.Rd tests/testthat.R tests/testthat/test_relatedFoundersCorrection.R tests/testthat/test_RVsharing.R tests/testthat/test_multipleFamilyCalculations.R tests/testthat/test_sharingProbabilityCalculations.R tests/testthat/test_pedigree-methods.R tests/testthat/test_grainNetworkHelper.R tests/testthat/test_monteCarloMethods.R inst/doc/RVS.R inst/doc/RVS.Rmd inst/misc/list_RV_haplo.R