The 'Rariant' package offers the framework to identify and characterize shifts of variant frequencies in a comparative setting from high-throughput short-read sequencing data. It estimates shifts in the non-consensus variant frequency and provides confidence estimates that allow for a quantitative assessment of presence or absence of variants. The vignette accompanying the package gives a detailed explanation and outlines a typical workflow on real data.
Julian Gehring, Simon Anders, Bernd Klaus (EMBL Heidelberg)
Maintainer: Julian Gehring <[email protected]>
vignette(package = "Rariant")
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