convert-utils: Position converters

In Rariant: Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies

Description

Utility functions to convert between 'GRanges' and 'character' objects.

Usage

gr2pos(x, range = TRUE)

pos2gr(x)

Arguments

x	GRanges or character object.
range	Should the range instead of the start position be returned?

Value

A GRanges object or character object, with the positions.

Examples

library(GenomicRanges)

gr = GRanges(1:2, IRanges(1:2, width = 1))

pos = gr2pos(gr)
gr2 = pos2gr(pos)

identical(gr, gr2)

Rariant documentation built on Nov. 8, 2020, 6:56 p.m.