yesnomaybe: Determine Variant Evidence
In Rariant: Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies
Description
Usage
Arguments
Value
Description
Determine the evidence (absence, presence, dontknow) of variants.
Usage
1
yesNoMaybe(x, null = 0, one = 0.5)
Arguments
x
GRanges with variants, as returned by 'rariant'.
null
Shift consistent with the _absence_ of a variant.
one
Shift consistent with the _presence_ of a variant.
Value
The same GRanges object as the input 'x', with the factor column
'verdict': 'absent', 'present', 'inbetween', 'dontknow'
Rariant documentation built on Nov. 8, 2020, 6:56 p.m.
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Description Usage Arguments Value
Description
Determine the evidence (absence, presence, dontknow) of variants.
Usage
1 | yesNoMaybe(x, null = 0, one = 0.5)
|
Arguments
x |
GRanges with variants, as returned by 'rariant'. |
null |
Shift consistent with the _absence_ of a variant. |
one |
Shift consistent with the _presence_ of a variant. |
Value
The same GRanges object as the input 'x', with the factor column 'verdict': 'absent', 'present', 'inbetween', 'dontknow'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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