R/AllGenerics.R

In RedeR: Interactive visualization and manipulation of nested networks

#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('rederpost', signature='obj', 
            function (obj, method, ..., gdata=list(...))                 
  standardGeneric ('rederpost'), package='RedeR')
setGeneric ('ping', signature='obj', function (obj)                 
  standardGeneric ('ping'), package='RedeR')
setGeneric ('version', signature='obj', function (obj)                 
  standardGeneric ('version'), package='RedeR')
setGeneric ('calld', signature='obj', function (obj,...)            
  standardGeneric ('calld'), package='RedeR')
setGeneric ('updateGraph', signature='obj', function (obj)                 
  standardGeneric ('updateGraph'), package='RedeR')
setGeneric ('getGraph', signature='obj', function (obj, ...)            
  standardGeneric ('getGraph'), package='RedeR')   
setGeneric ('addGraph', signature='obj', function (obj, g, ...)            
  standardGeneric ('addGraph'), package='RedeR')          
setGeneric ('addSeries', signature='obj', function (obj, g, ...)            
  standardGeneric ('addSeries'), package='RedeR') 
setGeneric ('duplicateGraph', signature='obj', function (obj, ...)            
  standardGeneric ('duplicateGraph'), package='RedeR')
setGeneric ('addSubgraph', signature='obj', function (obj, g, nodes, ...)            
  standardGeneric ('addSubgraph'), package='RedeR')  
setGeneric ('addSubgraph.list',   signature='obj', function (obj, g, nodeList, ...)            
  standardGeneric ('addSubgraph.list'), package='RedeR')   
setGeneric ('exitd', signature='obj', function (obj)                 
  standardGeneric ('exitd'), package='RedeR') 
setGeneric ('resetd', signature='obj', function (obj)                 
  standardGeneric ('resetd'), package='RedeR') 
setGeneric ('addLegend.color', signature='obj', function (obj, colvec, ...)            
  standardGeneric ('addLegend.color'), package='RedeR')
setGeneric ('addLegend.size', signature='obj', function (obj, sizevec, ...)            
  standardGeneric ('addLegend.size'), package='RedeR')            
setGeneric ('addLegend.shape', signature='obj', function (obj, shapevec, ...)            
  standardGeneric ('addLegend.shape'), package='RedeR')                                                                                            
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('getNodes', signature='obj', function (obj, ...) 
  standardGeneric ('getNodes'), package='RedeR')
setGeneric ('getNodeIDs', signature='obj', function (obj, ...) 
  standardGeneric ('getNodeIDs'), package='RedeR')
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('addNodes', signature='obj', function (obj, nodes)      
  standardGeneric ('addNodes'), package='RedeR')
setGeneric ('deleteNodes', signature='obj', function (obj, nodes)      
  standardGeneric ('deleteNodes'),  package='RedeR')
setGeneric ('nestNodes', signature='obj', function (obj, nodes,...)      
  standardGeneric ('nestNodes'), package='RedeR')
setGeneric ('nesthc', signature='obj', function (obj, hc,...)      
  standardGeneric ('nesthc'), package='RedeR')            
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('updateContainerSize', signature='obj', function (obj)             
  standardGeneric ('updateContainerSize'), package='RedeR')
setGeneric ('mergeOutEdges', signature='obj', function (obj,...)             
  standardGeneric ('mergeOutEdges'), package='RedeR')
setGeneric ('getContainerComponets',  signature='obj', function (obj, container)  
  standardGeneric ('getContainerComponets'),  package='RedeR')
setGeneric ('mergeNodes', signature='obj', function (obj, nodes)      
  standardGeneric ('mergeNodes'), package='RedeR')
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('getEdges', signature='obj', function (obj,...) 
  standardGeneric ('getEdges'), package='RedeR')
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('getEdgeIDs', signature='obj', function (obj,...) 
  standardGeneric ('getEdgeIDs'), package='RedeR')
setGeneric ('getSourceEdgeIDs', signature='obj', function (obj,...) 
  standardGeneric ('getSourceEdgeIDs'), package='RedeR')
setGeneric ('getTargetEdgeIDs', signature='obj', function (obj,...) 
  standardGeneric ('getTargetEdgeIDs'), package='RedeR')
#-----------------------------------------------------------------------------------------
#-----------------------------------------------------------------------------------------
setGeneric ('setArrowDirection',  signature='obj', 
            function (obj, nodeA, nodeB, direction)    
              standardGeneric ('setArrowDirection'), package='RedeR')
#-----------------------------------------------------------------------------------------
#-----------------------------------------------------------------------------------------
setGeneric ('addEdges', signature='obj', function (obj,edges)                      
  standardGeneric ('addEdges'), package='RedeR')
setGeneric ('deleteEdges', signature='obj', function (obj,edges)                      
  standardGeneric ('deleteEdges'), package='RedeR')
setGeneric ('addEdgeBetweenContainers', signature='obj', 
            function (obj,containerA,containerB)  
              standardGeneric ('addEdgeBetweenContainers'), package='RedeR')
#-----------------------------------------------------------------------------------------
#-----------------------------------------------------------------------------------------
setGeneric ('selectEdges', signature='obj', function (obj, nodeA, nodeB)    
  standardGeneric ('selectEdges'), package='RedeR')
setGeneric ('selectNodes', signature='obj', function (obj, nodes, nt=NULL)           
  standardGeneric ('selectNodes'), package='RedeR')
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('selectAllEdges', signature='obj', function (obj)     
  standardGeneric ('selectAllEdges'), package='RedeR')
setGeneric ('selectAllNodes', signature='obj', function (obj)     
  standardGeneric ('selectAllNodes'), package='RedeR')
setGeneric ('selectGraph', signature='obj', function (obj)     
  standardGeneric ('selectGraph'), package='RedeR')
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('deSelectEdges', signature='obj', function (obj)     
  standardGeneric ('deSelectEdges'), package='RedeR')
setGeneric ('deSelectNodes', signature='obj', function (obj)     
  standardGeneric ('deSelectNodes'), package='RedeR')
setGeneric ('deSelectGraph', signature='obj', function (obj)     
  standardGeneric ('deSelectGraph'), package='RedeR')
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('deleteSelectedEdges',  signature='obj', function (obj)   
  standardGeneric ('deleteSelectedEdges'), package='RedeR')
setGeneric ('deleteSelectedNodes',  signature='obj', function (obj)   
  standardGeneric ('deleteSelectedNodes'), package='RedeR')
#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------
setGeneric ('isDynamicsActive', signature='obj', function (obj)   
  standardGeneric ('isDynamicsActive'), package='RedeR')
setGeneric ('relax', signature='obj', 
            function (obj,p1=100,p2=100,p3=100,p4=100, p5=100,
                      p6=100,p7=10,p8=10,p9=1,ps=FALSE)
              standardGeneric ('relax'), package='RedeR')