Man pages for RiboProfiling
Ribosome Profiling Data Analysis: from BAM to Data Representation and Interpretation
| aroundPromoter | Returns the flank size around the TSS for the x % CDSs |
| cdsPosTransc | Per transcript relative position of start and end codons for... |
| codonDataCtrl | Codon frequency and coverage in ORFs on chromosome 1, for... |
| codonIndexCovCtrl | The read coverage for each codon in ORFs on chromosome 1, for... |
| codonInfo | Associates the read counts on codons with the codon type for... |
| codonPCA | PCA graphs on codon coverage |
| countShiftReads | Apply an offset on the read start along the transcript and... |
| countsPlot | Graphs of sample read counts (quality assesment) |
| ctrlGAlignments | Ribosome profiling data on chr1 in human primary BJ... |
| histMatchLength | Histogram of match length distribution of reads. |
| orfRelativePos | Relative position of the start and stop codon along the... |
| plotSummarizedCov | Plots the summarized coverage in a specified range (e.g.... |
| printPCA | Plots the PCA scatterplots produced by codonPCA function. |
| readStartCov | Read start coverage around the TSS on the predifined CDSs |
| readsToStartOrEnd | Reads in GAlignments converted to either Read Start (5') or... |
| RiboProfiling | RiboProfiling. |
| riboSeqFromBAM | Starting from a BAM file path: quality plots, shift ribosome... |
