getCID-methods: Cluster IDs of probes/genes from fitted 'Rnits'
In Rnits: R Normalization and Inference of Time Series data

Description Usage Arguments Details Value Examples

Retrieve cluster IDs of probes/genes from fitted Rnits object after fit has been run.

getCID(object)

## S4 method for signature 'Rnits'
getCID(object)

object

Rnits

If cluster = False during fitting, a vector of 1s will be returned.

A vector of cluster IDs corresponding to gene/probe names

# load pre-compiled expressionSet object for Ronen and Botstein yeast  chemostat data
data(yeastchemostat)
rnitsobj = build.Rnits(yeastchemostat, logscale = TRUE, normmethod = 'Between')
## Not run: 
# Fit model using gene-level summarization
rnitsobj <- fit(rnitsobj, gene.level = TRUE, clusterallsamples = FALSE)

# Get cluster IDs from fitted model
cid <- getCID(rnitsobj)

## End(Not run)