Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

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Rsamtools: Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

Rsamtools: Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Getting started

Package overview README.md An introduction to Rsamtools

Browse package contents

Vignettes Man pages API and functions Files

Package details
AuthorMartin Morgan, Hervé Pagès, Valerie Obenchain, Nathaniel Hayden
Bioconductor views Alignment Coverage DataImport QualityControl Sequencing
MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
LicenseArtistic-2.0 | file LICENSE
Version2.6.0
URL https://bioconductor.org/packages/Rsamtools 
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rsamtools")

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Rsamtools documentation built on Nov. 8, 2020, 8:11 p.m.

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