Rtreemix: Rtreemix: Mutagenetic trees mixture models.

Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

AuthorJasmina Bogojeska
Date of publicationNone
MaintainerJasmina Bogojeska <jasmina.bogojeska@gmail.com>
LicenseLGPL
Version1.36.0

View on Bioconductor

Files in this package

Rtreemix/DESCRIPTION
Rtreemix/NAMESPACE
Rtreemix/R
Rtreemix/R/AllClasses.R Rtreemix/R/ClassMethods.R Rtreemix/R/RtreemixMethods.R Rtreemix/R/StabilityFunctions.R Rtreemix/R/zzz.R
Rtreemix/build
Rtreemix/build/vignette.rds
Rtreemix/data
Rtreemix/data/hiv.data.RData
Rtreemix/inst
Rtreemix/inst/doc
Rtreemix/inst/doc/Rtreemix.R
Rtreemix/inst/doc/Rtreemix.Rnw
Rtreemix/inst/doc/Rtreemix.pdf
Rtreemix/inst/examples
Rtreemix/inst/examples/script.R
Rtreemix/inst/examples/treemix.pat
Rtreemix/man
Rtreemix/man/L1.dist.Rd Rtreemix/man/L2.norm.Rd Rtreemix/man/Pval.dist.Rd Rtreemix/man/RtreemixData-class.Rd Rtreemix/man/RtreemixGPS-class.Rd Rtreemix/man/RtreemixModel-class.Rd Rtreemix/man/RtreemixSim-class.Rd Rtreemix/man/RtreemixStats-class.Rd Rtreemix/man/bootstrap-methods.Rd Rtreemix/man/comp.models.Rd Rtreemix/man/comp.trees.Rd Rtreemix/man/confIntGPS-methods.Rd Rtreemix/man/distribution-methods.Rd Rtreemix/man/fit-methods.Rd Rtreemix/man/generate-methods.Rd Rtreemix/man/get.tree.levels.Rd Rtreemix/man/gps-methods.Rd Rtreemix/man/hiv.data.Rd Rtreemix/man/kullback.leibler.Rd Rtreemix/man/likelihoods-methods.Rd Rtreemix/man/sim-methods.Rd Rtreemix/man/stability.sim.Rd
Rtreemix/src
Rtreemix/src/Makevars
Rtreemix/src/Makevars.win
Rtreemix/src/Rtreemix.cc
Rtreemix/src/Rtreemix_patch.cc
Rtreemix/src/WrapGraph.cc
Rtreemix/src/cfunctions.cc
Rtreemix/src/include
Rtreemix/src/include/Array.hh
Rtreemix/src/include/Edge.hh
Rtreemix/src/include/Edge_Array.hh
Rtreemix/src/include/Graph.hh
Rtreemix/src/include/List.hh
Rtreemix/src/include/Map.hh
Rtreemix/src/include/Matrix.hh
Rtreemix/src/include/Node.hh
Rtreemix/src/include/NodeN.hh
Rtreemix/src/include/Node_Array.hh
Rtreemix/src/include/Queue.hh
Rtreemix/src/include/RefCounted.hh
Rtreemix/src/include/Rtreemix_patch.h
Rtreemix/src/include/Set.hh
Rtreemix/src/include/Vector.hh
Rtreemix/src/include/WrapGraph.hh
Rtreemix/src/include/cfunctions.h
Rtreemix/src/include/kmeans.h
Rtreemix/src/include/max_weight_branch.h
Rtreemix/src/include/mtree.h
Rtreemix/src/include/mtreemix.h
Rtreemix/src/include/replaceleda.hh
Rtreemix/src/kmeans.cc
Rtreemix/src/max_weight_branch.cc
Rtreemix/src/mtree.cc
Rtreemix/src/mtreemix.cc
Rtreemix/src/replaceleda.cc
Rtreemix/vignettes
Rtreemix/vignettes/ClassDiagram.pdf
Rtreemix/vignettes/ExtendedVignette.pdf
Rtreemix/vignettes/Rtreemix.Rnw
Rtreemix/vignettes/Rtreemix.bib
Rtreemix/vignettes/topologies.pdf
Rtreemix/vignettes/treemix.pat

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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