Rtreemix: Mutagenetic trees mixture models.

bootstrap-methods | Method for fitting a mutagenetic trees mixture model and... |

comp.models | Functions for comparing the tree topologies of two... |

comp.trees | Functions for quantifying the diversity of the nontrivial... |

confIntGPS-methods | Method for calculating GPS values and their 95% bootstrap... |

distribution-methods | Method for generating the (scaled) probablility distribution... |

fit-methods | Method for fitting mutagenetic trees mixture model to a given... |

generate-methods | Method for generating a random mutagenetic trees mixture... |

get.tree.levels | Function for constructing level vectors |

gps-methods | Methods for predicting the GPS of given dataset by using a... |

hiv.data | Example of an RtreemixData object |

kullback.leibler | Kullback-Leibler divergence |

L1.dist | Different distances between two given vectors |

L2.norm | L2 norm of a given vector |

likelihoods-methods | Method for predicting the likelihoods of a set of samples... |

Pval.dist | p-value of a given similarity value |

RtreemixData-class | Class "RtreemixData" |

RtreemixGPS-class | Class "RtreemixGPS" |

RtreemixModel-class | Class "RtreemixModel" |

RtreemixSim-class | Class "RtreemixSim" |

RtreemixStats-class | Class "RtreemixStats" |

sim-methods | Method for simulating data from a mutagenetic trees mixture... |

stability.sim | Stability analysis of the mutagenetic trees mixture model |

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