Man pages for Rtreemix
Rtreemix: Mutagenetic trees mixture models.
| bootstrap-methods | Method for fitting a mutagenetic trees mixture model and... |
| comp.models | Functions for comparing the tree topologies of two... |
| comp.trees | Functions for quantifying the diversity of the nontrivial... |
| confIntGPS-methods | Method for calculating GPS values and their 95% bootstrap... |
| distribution-methods | Method for generating the (scaled) probablility distribution... |
| fit-methods | Method for fitting mutagenetic trees mixture model to a given... |
| generate-methods | Method for generating a random mutagenetic trees mixture... |
| get.tree.levels | Function for constructing level vectors |
| gps-methods | Methods for predicting the GPS of given dataset by using a... |
| hiv.data | Example of an RtreemixData object |
| kullback.leibler | Kullback-Leibler divergence |
| L1.dist | Different distances between two given vectors |
| L2.norm | L2 norm of a given vector |
| likelihoods-methods | Method for predicting the likelihoods of a set of samples... |
| Pval.dist | p-value of a given similarity value |
| RtreemixData-class | Class "RtreemixData" |
| RtreemixGPS-class | Class "RtreemixGPS" |
| RtreemixModel-class | Class "RtreemixModel" |
| RtreemixSim-class | Class "RtreemixSim" |
| RtreemixStats-class | Class "RtreemixStats" |
| sim-methods | Method for simulating data from a mutagenetic trees mixture... |
| stability.sim | Stability analysis of the mutagenetic trees mixture model |
