Files in SAIGEgds

Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association Studies

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

src/saige_fitnull.cpp

src/saige_main.cpp

src/Makevars.win

src/SPATest.cpp

src/vectorization.h

src/Makevars

src/vectorization.cpp

R/assoc_single.r R/assoc_aggregate.r R/saige_main.r vignettes/SAIGEgds.Rmd man/SAIGEgds-package.Rd man/seqAssocGLMM_SPA.Rd man/seqAssocGLMM_spaBurden.Rd man/seqSAIGE_LoadPval.Rd man/seqAssocGLMM_spaACAT_O.Rd man/pACAT.Rd man/seqAssocGLMM_spaACAT_V.Rd man/seqFitNullGLMM_SPA.Rd tests/runTests.R

inst/CITATION

inst/doc/SAIGEgds.R

inst/doc/SAIGEgds.html

inst/doc/SAIGEgds.Rmd

inst/extdata/grm1k_10k_snp.gds

inst/extdata/pheno.txt.gz

inst/extdata/assoc_100snp.gds

inst/unitTests/saige_model.rds

inst/unitTests/saige_model_quant.rds

inst/unitTests/saige_pval.rds

inst/unitTests/saige_pval_quant.rds

inst/unitTests/test_SAIGE.R

SAIGEgds documentation built on Nov. 8, 2020, 7:46 p.m.