generateEvalPlot: Internal plotting function.

Description Usage Arguments Value Author(s)

View source: R/generateEvalPlot.R

Description

Genes are divided into NumExpressionGroups = 10 equally sized groups based on their non-zero median expression. Slope densities are plot for each group.

Usage

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generateEvalPlot(
  MedExpr,
  SeqDepth,
  Slopes,
  Name,
  NumExpressionGroups = 10,
  BeforeNorm = TRUE
)

Arguments

MedExpr

non-zero median expression for all genes.

SeqDepth

sequencing depth for each cell/sample.

Slopes

per gene estimates of the count-depth relationship.

Name

name for plot title.

NumExpressionGroups

the number of groups to split the data into, genes are split into equally sized groups based on their non-zero median expression.

BeforeNorm

whether dat have already been normalized.

Value

a plot of the un-normalized slope densities.

Author(s)

Rhonda Bacher


SCnorm documentation built on Nov. 8, 2020, 5:07 p.m.