getCounts: getCounts
In SCnorm: Normalization of single cell RNA-seq data
Description
Usage
Arguments
Value
Examples
Description
Convenient helper function to extract the normalized expression
matrix from the SummarizedExperiment
Usage
1
getCounts(DATA)
Arguments
DATA
An object of class SummarizedExperiment that contains
single-cell expression and metadata
Value
A matrix which contains the count data
where genes are in rows and cells are in columns
Examples
1
2
3
data(ExampleSimSCData)
ExampleData <- SummarizedExperiment::SummarizedExperiment(assays=list("Counts"=ExampleSimSCData))
myData <- getCounts(ExampleData)
SCnorm documentation built on Nov. 8, 2020, 5:07 p.m.
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Description Usage Arguments Value Examples
Description
Convenient helper function to extract the normalized expression matrix from the SummarizedExperiment
Usage
1 | getCounts(DATA)
|
Arguments
DATA |
An object of class |
Value
A matrix which contains the count data
where genes are in rows and cells are in columns
Examples
1 2 3 | data(ExampleSimSCData)
ExampleData <- SummarizedExperiment::SummarizedExperiment(assays=list("Counts"=ExampleSimSCData))
myData <- getCounts(ExampleData)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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