pseudotime: Pseudo-time Cell Ordering for HSMM Sinlge-cell RNA-seq data
In SEPA: SEPA
Description
Format
Source
References
Description
The dataset contains a data.frame with two columns specifying pseudo-time calculated by Monocle. Note that only cells on the main path are retained. Cells belonging to the contaminated path are excluded. Please check HSMMSingleCell package for details.
Format
A data.frame with two columns
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52529
References
Trapnell, C., Cacchiarelli, D., Grimsby, J., Pokharel, P., Li, S., Morse, M., ... & Rinn, J. L. (2014). The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nature biotechnology.
SEPA documentation built on May 6, 2019, 2:42 a.m.
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Description Format Source References
Description
The dataset contains a data.frame with two columns specifying pseudo-time calculated by Monocle. Note that only cells on the main path are retained. Cells belonging to the contaminated path are excluded. Please check HSMMSingleCell package for details.
Format
A data.frame with two columns
Source
http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52529
References
Trapnell, C., Cacchiarelli, D., Grimsby, J., Pokharel, P., Li, S., Morse, M., ... & Rinn, J. L. (2014). The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nature biotechnology.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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