truetime: True Experiment Time Points for HSMM Sinlge-cell RNA-seq data

Description Format Source References


The dataset contains a data.frame with two columns specifying true experiment time points. Note that only cells on the main path are retained. Cells belonging to the contaminated path are excluded. Please check HSMMSingleCell package for details.


A data.frame with two columns



Trapnell, C., Cacchiarelli, D., Grimsby, J., Pokharel, P., Li, S., Morse, M., ... & Rinn, J. L. (2014). The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nature biotechnology.

Search within the SEPA package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.