Man pages for SEPIRA
Systems EPigenomics Inference of Regulatory Activity
| ComputePCOR | Compute partial correlation coefficient |
| GeneExp | RNA-seq data matrix from GTEx |
| InferTFact | Estimate TF activity score in a sample |
| InferTFactPRL | Estimate TF activity score in different samples |
| LimmaFn | Do differential gene expression/ differential DNA methylation... |
| LUSCexp | LUSC RNA-seq dataset |
| LUSCmeth | LUSC DNA methylation dataset |
| sepiraInfNet | Infer tissue-specific regulatory network from gene expression... |
| sepiraRegAct | Infer TF activity from gene expression/ DNA methylation... |
| TFeid | Transcription factor genes annotated using Entrez gene ID |
| VALexp | RNA-seq data matrix from ProteinAtlas project |
