Description Usage Arguments Details Value Examples
InferTFactPRL
is an auxiliary function for function sepiraRegAct
.
1 | InferTFactPRL(idx, tmp, regnet)
|
idx |
A numeric vector indicating the samples from which you want to estimate the TF activity score. |
tmp |
A numeric matrix of gene expression levels for all TF target genes, with rows referring to genes, columns to samples. |
regnet |
The network estimated from function |
The user needs to input the index of the sample in the data matrix from which InferTFactPRL
estimates TF activity. InferTFactPRL
accomplishes the work by regressing the expression profile of TF target genes against the binding profile of this TF on these genes. The output t-statistics are taken as the TF activity score.
A vector storing the activity scores of all TFs from user specified sample in the data matrix.
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