GeneExp: RNA-seq data matrix from GTEx

Description Usage Format Source Examples

Description

GeneExp is a gene expression data matrix with rows (467 genes) and 520 columns. This data matrix is a subset of GTEx RNA-seq data which is a very big dataset. In this subset we only randomly chose 20 samples from each tissue type with more than 50 samples in the original GTEx data set.

Usage

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data("GeneExp")

Format

The format is: num [1:467, 1:520] 0.0361 0.758 0.5484 2.3569 6.1973 ... - attr(*, "dimnames")=List of 2 ..$ : chr [1:467] "9496" "22797" "7080" "6943" ... ..$ : chr [1:520] "Adipose Tissue" "Adipose Tissue" "Adipose Tissue" "Adipose Tissue" ...

Source

https://www.gtexportal.org/home/

Examples

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data(GeneExp)
## view the first 5 rows and columns
GeneExp[1:5,1:5]

SEPIRA documentation built on Nov. 8, 2020, 6:33 p.m.