physeq-methods: Retrieve a phyloseq-class object from object.

In SIAMCAT: Statistical Inference of Associations between Microbial Communities And host phenoTypes

Description

Retrieve a phyloseq-class object from object.

Usage

physeq(siamcat, verbose=1)

## S4 method for signature 'ANY'
physeq(siamcat, verbose = 1)

## S4 method for signature 'phyloseq'
physeq(siamcat)

Arguments

siamcat	(Required). An instance of siamcat-class that contains a label or instance of phyloseq-class.
verbose	If the slot is empty, should a message be printed? values can be either 0 (no output) or 1 (print message)

Value

The phyloseq-class object or NULL.

Examples

data(siamcat_example)
physeq(siamcat_example)

SIAMCAT documentation built on Nov. 8, 2020, 5:14 p.m.