siamcat_example: SIAMCAT example

In SIAMCAT: Statistical Inference of Associations between Microbial Communities And host phenoTypes

Description

Reduced version of the CRC dataset from Zeller et al. MSB 2014 (see http://msb.embopress.org/content/10/11/766), containing 100 features (15 associated features at 5% FDR in the original dataset and 85 random other features) and 141 samples, saved after the complete SIAMCAT pipelinehas been run.

Thus, the example dataset contains entries in every slot of the SIAMCAT object (see siamcat-class), e.g, eval_data or data_split.

Mainly used for running the examples in the function documentation.

Source

http://msb.embopress.org/content/10/11/766

SIAMCAT documentation built on Nov. 8, 2020, 5:14 p.m.