Description Usage Arguments Details Value Author(s) See Also Examples
Get annotation out of the RESOURCERER annotation file and link them to expression data with help of expression ID's
1 | RESOURCERER.annotation.to.ID(data, poslist, col.ID.link = 1, col.poslist.link = 1)
|
data |
data.frame with expression data including an expression ID column. |
poslist |
data.frame containing the RESOURCERER annotation file |
col.ID.link |
numeric value, specifying the column of |
col.poslist.link |
numeric value, specifying the column of |
This function will output the inserted dataset, including the necessary, for integrated.analysis, a
nnotation columns: "CHROMOSOME"
, "STARTPOS"
and "Symbol"
out of the inserted RESOURCE
RER annotation file poslist
.
A data.frame
is returned, containing a dataset with annotation columns which can be used for
integrated.analysis
Marten Boetzer, Melle Sieswerda, Renee x Menezes R.X.Menezes@lumc.nl
link.metadata
1 2 3 4 5 6 7 | # download expression array annotation from RESOURCERER
# ftp://occams.dfci.harvard.edu/pub/bio/tgi/data/Resourcerer
# it may be necessary to remove the first row, which states the genome build used for mapping
## Not run: read.an <- read.delim("affy_U133Plus2.txt", sep="\t", header=T)
# get physical mapping columns
## Not run: expr.data <- RESOURCERER_annotation_to_ID(data = read.expr, poslist = read.an, col.ID.link = 1, col.poslist.link = 1)
|
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