getoverlappingregions: Get the overlapping regions between independent and dependent...

In SIM: Integrated Analysis on two human genomic datasets

Description

Generates a table with overlapping regions.

Usage

getoverlappingregions(independent_regions, 
                      dependent_regions, 
                      method = c("union", "overlapping"))

Arguments

independent_regions	data.frame().Independent regions found with tab tabulate.top.indep.features.
dependent_regions	data.frame().Independent regions found with tab tabulate.top.dep.features.
method	method to estimate the overlapping regions, either "union" or "overlapping". overlapping outputs only the overlapping parts of the overlapping regions. union outputs the whole region. Say independent region = 1-10, dependent region = 5-12. The output is 1-12.

Details

Calculates the overlap between two tables.

Author(s)

Marten Boetzer, Melle Sieswerda, Renee X. de Menezes [e-mail]

See Also

SIM, tabulate.top.dep.features, tabulate.top.indep.features, sim.plot.overlapping.indep.dep.features

Examples

#no examples yet!

SIM documentation built on Nov. 8, 2020, 4:58 p.m.