getoverlappingregions: Get the overlapping regions between independent and dependent...

Description Usage Arguments Details Author(s) See Also Examples

View source: R/getoverlappingregions.R

Description

Generates a table with overlapping regions.

Usage

1
2
3
getoverlappingregions(independent_regions, 
                      dependent_regions, 
                      method = c("union", "overlapping"))

Arguments

independent_regions

data.frame().Independent regions found with tab tabulate.top.indep.features.

dependent_regions

data.frame().Independent regions found with tab tabulate.top.dep.features.

method

method to estimate the overlapping regions, either "union" or "overlapping". overlapping outputs only the overlapping parts of the overlapping regions. union outputs the whole region. Say independent region = 1-10, dependent region = 5-12. The output is 1-12.

Details

Calculates the overlap between two tables.

Author(s)

Marten Boetzer, Melle Sieswerda, Renee X. de Menezes R.X.Menezes@lumc.nl

See Also

SIM, tabulate.top.dep.features, tabulate.top.indep.features, sim.plot.overlapping.indep.dep.features

Examples

1
#no examples yet!

SIM documentation built on Nov. 8, 2020, 4:58 p.m.