SIMLR_Estimate_Number_of_Clusters: SIMLR Estimate Number of Clusters

In SIMLR: Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)

Description

estimate the number of clusters by means of two huristics as discussed in the SIMLR paper

Usage

SIMLR_Estimate_Number_of_Clusters(X, NUMC = 2:5, cores.ratio = 1)

Arguments

X	an (m x n) data matrix of gene expression measurements of individual cells
NUMC	vector of number of clusters to be considered
cores.ratio	ratio of the number of cores to be used when computing the multi-kernel

Value

a list of 2 elements: K1 and K2 with an estimation of the best clusters (the lower values the better) as discussed in the original paper of SIMLR

Examples

SIMLR_Estimate_Number_of_Clusters(BuettnerFlorian$in_X,
   NUMC = 2:5,
   cores.ratio = 0)

SIMLR documentation built on Nov. 8, 2020, 5:40 p.m.