ZeiselAmit: test dataset for SIMLR large scale

Description Usage Format Value Source


example dataset to test SIMLR large scale. This is a reduced version of the dataset from the work by Zeisel, Amit, et al.




gene expression measurements of individual cells


list of 6: in_X = input dataset as an (m x n) gene expression measurements of individual cells, n_clust = number of clusters (number of distinct true labels), true_labs = ground true of cluster assignments for each of the n_clust clusters, seed = seed used to compute the results for the example, results = result by SIMLR for the inputs defined as described, nmi = normalized mutual information as a measure of the inferred clusters compared to the true labels


Zeisel, Amit, et al. "Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq." Science 347.6226 (2015): 1138-1142.

SIMLR documentation built on Nov. 8, 2020, 5:40 p.m.