CIMLR: This function has been removed and it is now provided by the...

In SIMLR: Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)

Description

perform the CIMLR clustering algorithm

Usage

CIMLR(X, c, no.dim = NA, k = 10, cores.ratio = 1)

Arguments

X	a list of multi-omic data each of which is an (m x n) data matrix of measurements of cancer patients
c	number of clusters to be estimated over X
no.dim	number of dimensions
k	tuning parameter
cores.ratio	ratio of the number of cores to be used when computing the multi-kernel

Value

clusters the patients based on CIMLR and their similarities

Examples

   
## Not run: 
CIMLR(X = GliomasReduced$in_X, c = 3, cores.ratio = 0)   

## End(Not run)    

SIMLR documentation built on Nov. 8, 2020, 5:40 p.m.