colorectal dataset consists: i) an named vector
, which represents the $log2$ fold changes of the genes chosen as differentially expressed between
colorectal cancer and normal samples based on data from Hong et al, 2007, using a $FDR=0.1$ and
the universe of all Entrez gene IDs available on the array,
ALL_Colorectal. These two vectors were obtained starting from the
top dataframe which is the output from the topTable function of the limma package using the RMA processed gene expression data downloaded from
The microarray platform used was Affymetrix HGU-133PLUS2.0.
Yi Hong and Kok Sun Ho and Kong Weng Eu and Peh Yean Cheah, A susceptibility gene set for early onset colorectal cancer that integrates diverse signaling pathways: implication for tumorigenesis, Clin Cancer Res, 2007, 13(4),1107-14.
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