STATegRa: Classes and methods for multi-omics data integration

Classes and tools for multi-omics data integration.

AuthorSTATegra Consortia
Date of publicationNone
MaintainerDavid Gomez-Cabrero <david.gomezcabrero@ki.se>, Patricia Sebastián-León <psebastian@cipf.es>, Gordon Ball <gordon.ball@ki.se>
LicenseGPL-2
Version1.8.0

View on Bioconductor

Files in this package

STATegRa/DESCRIPTION
STATegRa/NAMESPACE
STATegRa/R
STATegRa/R/STATegRa_combiningMappings.R STATegRa/R/STATegRa_fused.R STATegRa/R/STATegRa_holistOmics.R STATegRa/R/STATegRa_omicsCLUST_bioDist.R STATegRa/R/STATegRa_omicsCLUST_bioDistW.R STATegRa/R/STATegRa_omicsCLUST_bioMap.R STATegRa/R/STATegRa_omicsNPC.R STATegRa/R/STATegRa_omicsNPC_internal.R STATegRa/R/STATegRa_omicsPCA_caClass.R STATegRa/R/STATegRa_omicsPCA_methods.R STATegRa/R/STATegRa_omicsPCA_plotting.R STATegRa/R/STATegRa_package.R
STATegRa/build
STATegRa/build/vignette.rds
STATegRa/data
STATegRa/data/STATegRa_S1.rda
STATegRa/data/STATegRa_S2.rda
STATegRa/data/STATegRa_S3.rda
STATegRa/data/TCGA_BRCA_Batch_93.rda
STATegRa/data/datalist
STATegRa/inst
STATegRa/inst/NEWS
STATegRa/inst/doc
STATegRa/inst/doc/STATegRa.R
STATegRa/inst/doc/STATegRa.Rmd
STATegRa/inst/doc/STATegRa.html
STATegRa/inst/unitTests
STATegRa/inst/unitTests/test_PCA.selection.R
STATegRa/inst/unitTests/test_createOmicsExpressionSet.R
STATegRa/inst/unitTests/test_modelSelection.R
STATegRa/inst/unitTests/test_selectCommonComps.R
STATegRa/man
STATegRa/man/PCA.selection.Rd STATegRa/man/STATegRa-deprecated.Rd STATegRa/man/STATegRa.Rd STATegRa/man/STATegRaUsersGuide.Rd STATegRa/man/STATegRa_data.Rd STATegRa/man/STATegRa_data_TCGA_BRCA.Rd STATegRa/man/bioDist.Rd STATegRa/man/bioDistFeature.Rd STATegRa/man/bioDistFeaturePlot.Rd STATegRa/man/bioDistW.Rd STATegRa/man/bioDistWPlot.Rd STATegRa/man/bioDistclass.Rd STATegRa/man/bioMap.Rd STATegRa/man/biplotRes.Rd STATegRa/man/caClass-class.Rd STATegRa/man/combiningMappings.Rd STATegRa/man/createOmicsExpressionSet.Rd STATegRa/man/getInitialData.Rd STATegRa/man/getLoadings.Rd STATegRa/man/getMethodInfo.Rd STATegRa/man/getPreprocessing.Rd STATegRa/man/getScores.Rd STATegRa/man/getVAF.Rd STATegRa/man/holistOmics.Rd STATegRa/man/modelSelection.Rd STATegRa/man/omicsCompAnalysis.Rd STATegRa/man/omicsNPC.Rd STATegRa/man/plotRes.Rd STATegRa/man/plotVAF.Rd STATegRa/man/selectCommonComps.Rd
STATegRa/tests
STATegRa/tests/STATEgRa_Example.omicsCLUST.R
STATegRa/tests/STATEgRa_Example.omicsPCA.R
STATegRa/tests/STATegRa_Example.omicsNPC.R
STATegRa/tests/runTests.R
STATegRa/vignettes
STATegRa/vignettes/STATegRa.Rmd
STATegRa/vignettes/bibliography.bib
STATegRa/vignettes/img
STATegRa/vignettes/img/omicsClustering.jpg
STATegRa/vignettes/img/omicsPCA.png

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