R bioconductor package for computing semantic distance statistic for protein function predictors.

File list/functions:

computeIA.R :

This file contains the computeIA function, which creates a file containing all of the information accretion data for the input (organism, ontology). Both inputs are strings.

findRuMi.R :

This file contains the computeMI and computeRU functions, which calculate the remaining uncertainty and misinformation for given sets of true and predicted terms in a specified ontology.

gene2GO.R :

Contains additional helper functions to load GO data.

utilities.R :

Contains helper functions to initialize package environemnts.

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SemDist documentation built on Nov. 8, 2020, 8:27 p.m.