termcnt: Term Count Data

Description Usage Format Source Examples

Description

This data set contains the term count values for each term in the requested ontology/species (the number of times that the term annotates a protein). This can be used along with the parent count to calculate information accretion.

Usage

1

Format

A named numeric vector with one value corresponding to each GO accession in the ontology.

Source

The gene ontology data was obtained from the GO.db package and the annotation data was obtained from the following packages for each organism:

anopheles = org.Ag.eg.db

arabidopsis = org.At.tair.db

bovine = org.Bt.eg.db

canine = org.Cf.eg.db

chicken = org.Gg.eg.db

chimp = org.Pt.eg.db

ecolik12 = org.EcK12.eg.db

fly = org.Dm.eg.db

human = org.Hs.eg.db

malaria = org.Pf.plasmo.db

mouse = org.Mm.eg.db

pig = org.Ss.eg.db

rat = org.Rn.eg.db

rhesus = org.Mmu.eg.db

worm = org.Ce.eg.db

xenopus = org.Xl.eg.db

yeast = org.Sc.sgd.db

zebrafish = org.Dr.eg.db

Examples

1
2
data("Term_Count_mouse_CC", package = "SemDist")
str(termcnt)

SemDist documentation built on Nov. 1, 2018, 2:25 a.m.