API for SeqSQC
A bioconductor package for sample quality check with next generation sequencing data
| Global functions | |
|---|---|
| "QCresult<-",SeqSQC-method | Man page |
| "gdsfile<-",SeqSQC-method | Man page |
| .onLoad | Source code |
| CCDS.Hs37.3.reduced_chr1.bed | Man page |
| IBDCheck | Man page Source code |
| IBDRemove | Man page Source code |
| Inbreeding | Man page Source code |
| LoadVfile | Man page Source code |
| MissingRate | Man page Source code |
| PCACheck | Man page Source code |
| QCresult | Man page |
| QCresult,SeqSQC-method | Man page |
| QCresult<- | Man page |
| QCresult<-,SeqSQC-method | Man page |
| RenderReport | Man page Source code |
| SeqOpen | Man page Source code |
| SeqSQC | Man page Source code |
| SeqSQC-class | Man page |
| SeqSQC-package | Man page |
| SexCheck | Man page Source code |
| example.gds | Man page |
| example.seqfile.Rdata | Man page |
| example_sub.vcf | Man page |
| gdsfile | Man page |
| gdsfile,SeqSQC-method | Man page |
| gdsfile<- | Man page |
| gdsfile<-,SeqSQC-method | Man page |
| mergeGDS | Source code |
| plotIBD | Source code |
| plotInbreeding | Source code |
| plotMissingRate | Source code |
| plotPop | Source code |
| plotQC | Man page Source code |
| plotQCData | Source code |
| plotSexCheck | Source code |
| problemList | Man page Source code |
| readgdsn | Source code |
| sampleAnnotation.txt | Man page |
| sampleQC | Man page Source code |
| subsetGDS | Source code |
