Files in SeqSQC

A bioconductor package for sample quality check with next generation sequencing data

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

R/MissingRate.R R/IBDCheck.R R/problemList.R R/readgdsn.R R/RenderReport.R R/IBDRemove.R R/mergeGDS.R R/subsetGDS.R R/SeqOpen.R R/LoadVfile.R R/plotQCData.R R/SexCheck.R R/plotPop.R R/zzz.R R/plotSexCheck.R R/PCACheck.R R/plotIBD.R R/S4.R R/plotMissingRate.R R/plotQC.R R/dataset_docum.R R/Inbreeding.R R/plotInbreeding.R R/SeqSQC-package.R R/sampleQC.R vignettes/vignette.Rmd man/IBDCheck.Rd man/sampleAnnotation.txt.Rd man/SeqSQC-class.Rd man/SeqOpen.Rd man/plotQC.Rd man/example_sub.vcf.Rd man/IBDRemove.Rd man/SexCheck.Rd man/RenderReport.Rd man/SeqSQC-package.Rd man/LoadVfile.Rd man/MissingRate.Rd man/example.seqfile.Rdata.Rd man/problemList.Rd man/PCACheck.Rd man/Inbreeding.Rd man/CCDS.Hs37.3.reduced_chr1.bed.Rd man/example.gds.Rd man/sampleQC.Rd tests/testthat.R tests/testthat/test_metaInput.R inst/todo.Rmd

inst/CITATION

inst/doc/vignette.html

inst/doc/vignette.R inst/doc/vignette.Rmd

inst/extdata/CCDS.Hs37.3.reduced_chr1.bed

inst/extdata/example_sub.vcf

inst/extdata/metadata.csv

inst/extdata/sampleAnnotation.txt

inst/extdata/example.gds

inst/extdata/example.seqfile.Rdata

inst/extdata/sampleQCReport.Rmd inst/script/make-metadata.R

SeqSQC documentation built on Nov. 8, 2020, 5:03 p.m.