SeqSQC
A bioconductor package for sample quality check with next generation sequencing data

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SeqSQC: A bioconductor package for sample quality check with next generation sequencing data

SeqSQC: A bioconductor package for sample quality check with next generation sequencing data

The SeqSQC is designed to identify problematic samples in NGS data, including samples with gender mismatch, contamination, cryptic relatedness, and population outlier.

Getting started

Package overview README.md Sample Quality Check for NGS Data using SeqSQC package

Browse package contents

Vignettes Man pages API and functions Files

Package details
AuthorQian Liu [aut, cre]
Bioconductor views Experiment Data Genome Homo_sapiens_Data Project1000genomes Sequencing Data
MaintainerQian Liu <qliu7@buffalo.edu>
LicenseGPL-3
Version1.12.0
URL https://github.com/Liubuntu/SeqSQC 
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SeqSQC")

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SeqSQC documentation built on Nov. 8, 2020, 5:03 p.m.

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