SeqSQC: A bioconductor package for sample quality check with next generation sequencing data

The SeqSQC is designed to identify problematic samples in NGS data, including samples with gender mismatch, contamination, cryptic relatedness, and population outlier.

Package details

AuthorQian Liu [aut, cre]
Bioconductor views Experiment Data Genome Homo_sapiens_Data Project1000genomes Sequencing Data
MaintainerQian Liu <[email protected].edu>
LicenseGPL-3
Version1.4.0
URL https://github.com/Liubuntu/SeqSQC
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SeqSQC")

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SeqSQC documentation built on Nov. 1, 2018, 3:55 a.m.