Files in SeqVarTools
Tools for variant data
NAMESPACE
DESCRIPTION
README.md
tests/test.R
R/mendelErr.R
R/hwe.R
R/AllClasses.R
R/pca.R
R/regression.R
R/AllUtilities.R
R/refFrac.R
R/Methods-SeqVarGDSClass.R
R/duplicateDiscordance.R
R/inbreedCoeff.R
R/AllGenerics.R
R/chromWithPAR.R
R/alternateAlleleDetection.R
R/Methods-Iterator.R
R/Methods-SeqVarData.R
R/setVariantID.R
man/getGenotype.Rd
man/chromWithPAR.Rd
man/mendelErr.Rd
man/isVariant.Rd
man/pca.Rd
man/duplicateDiscordance.Rd
man/countSingletons.Rd
man/alleleFrequency.Rd
man/setVariantID.Rd
man/variantInfo.Rd
man/Iterator-class.Rd
man/missingGenotypeRate.Rd
man/pedigree.Rd
man/isSNV.Rd
man/applyMethod.Rd
man/heterozygosity.Rd
man/allele-methods.Rd
man/regression.Rd
man/inbreedCoeff.Rd
man/refFrac.Rd
man/SeqVarData-class.Rd
man/imputedDosage.Rd
man/meanBySample.Rd
man/SeqVarTools-package.Rd
man/getVariableLengthData.Rd
man/titv.Rd
man/alternateAlleleDetection.Rd
man/hwe.Rd
inst/NEWS.Rd
inst/unitTests/test_applyMethod.R
inst/unitTests/test_dosage.R
inst/unitTests/test_alleles.R
inst/unitTests/test_pca.R
inst/unitTests/test_setVariantID.R
inst/unitTests/test_regression.R
inst/unitTests/test_alternateAlleleDetection.R
inst/unitTests/test_VariableLength.R
inst/unitTests/test_utils.R
inst/unitTests/test_mendelErr.R
inst/unitTests/test_parallel.R
inst/unitTests/test_Iterator.R
inst/unitTests/test_hethom.R
inst/unitTests/test_meanBySample.R
inst/unitTests/test_inbreedCoeff.R
inst/unitTests/test_titv.R
inst/unitTests/test_missingGenotypeRate.R
inst/unitTests/test_duplicateDiscordance.R
inst/unitTests/test_SeqVarData.R
inst/unitTests/test_refFrac.R
inst/unitTests/test_countSingletons.R
inst/unitTests/test_getData.R
inst/unitTests/test_alleleFrequency.R
inst/unitTests/test_hwe.R
inst/unitTests/test_sparse.R
inst/extdata/1KG_chrY.gds
inst/extdata/hapmap_annotation_DD.txt
inst/extdata/gl_chr1.gds
inst/extdata/hapmap_annotation.txt
inst/extdata/gl_chr1.vcf
inst/extdata/hapmap_exome_chr22.gds
inst/doc/Iterators.pdf
inst/doc/SeqVarTools.pdf
inst/doc/SeqVarTools.R
inst/doc/Iterators.R
inst/doc/SeqVarTools.Rnw
inst/doc/Iterators.Rnw
data/pedigree.RData
build/vignette.rds
vignettes/SeqVarTools.bib
vignettes/SeqVarTools.Rnw
vignettes/Iterators.Rnw
