pedigree: Pedigree for example data

In SeqVarTools: Tools for variant data

Description

Pedigree for example data files in SeqArray.

Usage

pedigree

Format

A data.frame with the following columns.

family

Family ID

individ

Individual ID

father

Father ID

mother

Mother ID

sex

Sex

sample.id

sample.id in VCF/GDS files

Details

There is one trio in the pedigree.

Source

HapMap

Examples

data(pedigree)
head(pedigree)
gds <- seqOpen(seqExampleFileName("gds"))
setdiff(seqGetData(gds, "sample.id"), pedigree$sample.id)
seqClose(gds)

SeqVarTools documentation built on Nov. 22, 2020, 2 a.m.