knownSignatures: Previously identified gene signatures for use in...

Description Usage Format Details Note Source References Examples

Description

Previously identified gene signature sets. These include three signatures sets from Venet et. al.

Usage

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Format

The data object knownSignatures is a list of sets of gene signatures. Each set is a list of gene signatures. Each signature is a vector of gene names.

Gene signature sets include:

Details

These data are taken directly from the supplemental material for Venet et. al "Most random gene expression signatures are significantly associated with breast cancer outcome".

Note

Other signatures of interest can be downloaded at http://www.broad.mit.edu/gsea/downloads.jsp#msigdb and read in using the read.gmt function in the qusage package.

Source

http://www.ploscompbiol.org/article/fetchSingleRepresentation.action?uri=info:doi/10.1371/journal.pcbi.1002240.s001

References

Venet, David, Jacques E. Dumont, and Vincent Detours. "Most random gene expression signatures are significantly associated with breast cancer outcome." PLoS Computational Biology 7.10 (2011): e1002240.

Examples

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SigCheck documentation built on May 6, 2019, 3:01 a.m.