nkiResults: Precomputed list of results for a call to 'sigCheckAll' using...

In SigCheck: Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata

Description

This object represents the results lists returned by a call to sigCheckAll. It is used by the vignette accompanying the SigCheck package as an example result. It was derived by running the code in the example below.

Usage

data(nkiResults)

Examples

## Not run: 
# This is how nkiResults is built
library(breastCancerNKI)
data(nki)
nki = nki[,!is.na(nki$e.dmfs)]
data(knownSignatures)
check <- sigCheck(nki, classes="e.dmfs", survival="t.dmfs",
                  signature=knownSignatures$cancer$VANTVEER,
                  annotation="HUGO.gene.symbol",
                  validationSamples=which(nki$series=="NKI2"))
                  
nkiResults <- sigCheckAll(check,iterations=1000) 

## End(Not run)

# Example usage of nkiResults
data(nkiResults)
sigCheckPlot(nkiResults)

SigCheck documentation built on Nov. 8, 2020, 6:38 p.m.