SigsPack: Mutational Signature Estimation for Single Samples

Single sample estimation of exposure to mutational signatures. Exposures to known mutational signatures are estimated for single samples, based on quadratic programming algorithms. Bootstrapping the input mutational catalogues provides estimations on the stability of these exposures. The effect of the sequence composition of mutational context can be taken into account by normalising the catalogues.

Package details

AuthorFranziska Schumann <[email protected]>
MaintainerFranziska Schumann <[email protected]>
LicenseGPL-3
Version1.0.0
URL https://github.com/bihealth/SigsPack
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SigsPack")

Try the SigsPack package in your browser

Any scripts or data that you put into this service are public.

SigsPack documentation built on Oct. 31, 2019, 10:35 a.m.