SimBindProfiles: Similar Binding Profiles

SimBindProfiles identifies common and unique binding regions in genome tiling array data. This package does not rely on peak calling, but directly compares binding profiles processed on the same array platform. It implements a simple threshold approach, thus allowing retrieval of commonly and differentially bound regions between datasets as well as events of compensation and increased binding.

AuthorBettina Fischer, Enrico Ferrero, Robert Stojnic, Steve Russell
Date of publicationNone
MaintainerBettina Fischer <bef22@cam.ac.uk>
LicenseGPL-3
Version1.12.0

View on Bioconductor

Files

SimBindProfiles/DESCRIPTION
SimBindProfiles/NAMESPACE
SimBindProfiles/R
SimBindProfiles/R/compensationRegions.R SimBindProfiles/R/eSetScatterPlot.R SimBindProfiles/R/filterRegionsPairwise.R SimBindProfiles/R/filterRegionsThreeway.R SimBindProfiles/R/findBoundCutoff.R SimBindProfiles/R/increasedBindingRegions.R SimBindProfiles/R/normalNull.R SimBindProfiles/R/pairwiseRegions.R SimBindProfiles/R/plotBoundProbes.R SimBindProfiles/R/probeAnnoFromESet.R SimBindProfiles/R/probeLengthPlot.R SimBindProfiles/R/readSgrFiles.R SimBindProfiles/R/setBoundFlag.R SimBindProfiles/R/setFlagCompensation.R SimBindProfiles/R/setFlagIncreasedBinding.R SimBindProfiles/R/setPairwiseClassFlag.R SimBindProfiles/R/setThreewayClassFlag.R SimBindProfiles/R/threewayRegions.R SimBindProfiles/R/twoGaussiansNull.BF.R
SimBindProfiles/build
SimBindProfiles/build/vignette.rds
SimBindProfiles/data
SimBindProfiles/data/SGR.RData
SimBindProfiles/data/datalist
SimBindProfiles/data/precomputed.RData
SimBindProfiles/inst
SimBindProfiles/inst/doc
SimBindProfiles/inst/doc/SimBindProfiles.R
SimBindProfiles/inst/doc/SimBindProfiles.Rnw
SimBindProfiles/inst/doc/SimBindProfiles.pdf
SimBindProfiles/inst/extdata
SimBindProfiles/inst/extdata/DDam_trunc.txt
SimBindProfiles/inst/extdata/SoxN-DDam_trunc.txt
SimBindProfiles/inst/extdata/SoxNDam_trunc.txt
SimBindProfiles/man
SimBindProfiles/man/SGR.Rd SimBindProfiles/man/SimBindProfiles-package.Rd SimBindProfiles/man/compensationRegions.Rd SimBindProfiles/man/eSetScatterPlot.Rd SimBindProfiles/man/findBoundCutoff.Rd SimBindProfiles/man/increasedBindingRegions.Rd SimBindProfiles/man/pairwiseRegions.Rd SimBindProfiles/man/plotBoundProbes.Rd SimBindProfiles/man/probeAnnoFromESet.Rd SimBindProfiles/man/probeLengthPlot.Rd SimBindProfiles/man/readSgrFiles.Rd SimBindProfiles/man/threewayRegions.Rd
SimBindProfiles/vignettes
SimBindProfiles/vignettes/Makefile
SimBindProfiles/vignettes/SimBindProfiles-Bibliography.bib
SimBindProfiles/vignettes/SimBindProfiles.Rnw
SimBindProfiles/vignettes/SimBindProfiles.tex

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