plotBoundProbes: Plot coloured bound probes
In SimBindProfiles: Similar Binding Profiles

Description Usage Arguments Details Value Author(s) See Also Examples

Scatterplot of bound probes in colour based on the method.

1 2	plotBoundProbes(xSet, sgrset, method=c("pairwise" , "compensation" , "increasedBinding"), bound.cutoff, diff.cutoff, cols=NULL, pcex=2)

`xSet`	object of class ExpressionSet
`sgrset`	integer; specifying which data set to use from the ExpressionSet
`method`	a character string equal to “pairwise” , “increasedBinding” , “compensation”
`bound.cutoff`	numeric; threshold above probes are considered “bound”
`diff.cutoff`	numeric; difference threshold to determine if object 1 and object 2 are uniquely bound
`cols`	vector of colours to highlight probes, otherwise colours are set by default
`pcex`	a numerical vector giving the amount by which probe symbols should be scaled relative to the default

Scatterplot of the bound probes in colour based on the selected method

Coloured scatter plot

Bettina Fischer

plot, pairwiseRegions, compensationRegions, increasedBindingRegions

1
2
3

  dataPath <- system.file("data",package="SimBindProfiles")
  load(file.path(dataPath,"SGR.RData"))
  plotBoundProbes(SGR, sgrset=c(1,2), method="pairwise", bound.cutoff=1.86, diff.cutoff=1.4)