probeLengthPlot: Plot the probe length frequency
In SimBindProfiles: Similar Binding Profiles

Description Usage Arguments Details Value Author(s) See Also Examples

Plot the probe length frequency.

1	probeLengthPlot(xSet, sgrset = 1, chr = NULL, bound.cutoff, probe.max.spacing = 200, xlim.max = 25)

`xSet`	object of class ExpressionSet
`sgrset`	integer; specifying which data set to use from the ExpressionSet
`chr`	probes from which chromosome to be used, default NULL means all probes
`bound.cutoff`	numeric; threshold above probes are considered “bound”
`probe.max.spacing`	integer; maximum amount of base pairs at which bound probes are condensed into one region.
`xlim.max`	integer; maximum number of probes plotted along the x-axsis

Plot the probe length frequency per regions based on a bound.cutoff value.

Plot of frequency of the number of probes within bound regions

Bettina Fischer

plot

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  dataPath <- system.file("data",package="SimBindProfiles")
  load(file.path(dataPath,"SGR.RData"))
  probeLengthPlot(SGR, sgrset=1, chr=NULL, bound.cutoff=1.2, probe.max.spacing=200, xlim.max=50)