SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationships between clusters in order to guide the user during cluster identification and other downstream applications. The package is built around a shiny "gadget" to allow the exploration of the data with multiple plots in parallel and an interactive UI. The user can easily toggle between different cluster resolutions in order to choose the most appropriate visual cues.
Package details |
|
---|---|
Author | Joseph Bergenstraahle [aut, cre] |
Bioconductor views | Clustering RNASeq Software Transcriptomics |
Maintainer | Joseph Bergenstraahle <joseph.bergenstrahle@gmail.com> |
License | MIT + file LICENSE |
Version | 1.6.0 |
Package repository | View on Bioconductor |
Installation |
Install the latest version of this package by entering the following in R:
|
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.