dot-arrayPlot: Array pie plot
In SpatialCPie: Cluster analysis of Spatial Transcriptomics data
Description
Usage
Arguments
Value
Description
Array pie plot
Usage
1
2
3
.arrayPlot(scores, coordinates, counts = NULL, image = NULL,
scoreMultiplier = 1, spotScale = 1, spotOpacity = 1,
numTopGenes = 5)
Arguments
scores
data.frame with cluster scores for each
spot containing the columns "spot", "name", and "score".
coordinates
data.frame with rownames matching
those in scores and columns "x" and "y" specifying the plotting
position of each observation.
image
a grid.grob to use as background to the
plots.
scoreMultiplier
log multiplication factor applied to the score vector.
spotScale
pie chart size.
spotOpacity
pie chart opacity.
Value
ggplot object of the pie plot.
SpatialCPie documentation built on Nov. 8, 2020, 7:43 p.m.
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Description Usage Arguments Value
Description
Array pie plot
Usage
1 2 3 | .arrayPlot(scores, coordinates, counts = NULL, image = NULL,
scoreMultiplier = 1, spotScale = 1, spotOpacity = 1,
numTopGenes = 5)
|
Arguments
scores |
|
coordinates |
|
image |
a |
scoreMultiplier |
log multiplication factor applied to the score vector. |
spotScale |
pie chart size. |
spotOpacity |
pie chart opacity. |
Value
ggplot object of the pie plot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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