dot-clusterGraph: Cluster graph

In SpatialCPie: Cluster analysis of Spatial Transcriptomics data

Description

Cluster graph

Usage

.clusterGraph(assignments, clusterMeans, featureName,
  transitionProportions = "To", transitionLabels = FALSE,
  transitionThreshold = 0, numTopFeatures = 10)

Arguments

assignments	data.frame with columns "name", "resolution", and "cluster".
clusterMeans	data.frame with columns "name", "resolution", "cluster", featureName, and "mean".
featureName	character with the name of the clustered feature.
transitionProportions	how to compute the transition proportions. Possible values are: "From": based on the total number of assignments in the lower-resolution cluster "To": based on the total number of assignments in the higher-resolution cluster
transitionLabels	logical specifying whether to show edge labels.
transitionThreshold	hide edges with transition proportions below this threshold.
numTopFeatures	integer specifying the number of features to show in the hover tooltips.

Value

ggplot object of the cluster graph.

SpatialCPie documentation built on Nov. 8, 2020, 7:43 p.m.